If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ), 'gf_id' => 'HOM05D000839', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000839' ), 'data_identifier' => 'HOM05D000839', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000839', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '711', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p13750' => 'bna', 'A02p18620' => 'bna', 'A02p22770' => 'bna', 'A02p22790' => 'bna', 'A05p28130' => 'bna', 'A06p12290' => 'bna', 'A06p12300' => 'bna', 'A06p12330' => 'bna', 'A07p27160' => 'bna', 'A07p39170' => 'bna', 'A07p44440' => 'bna', 'A07p44480' => 'bna', 'A08p31350' => 'bna', 'Aa31LG4G1610' => 'aar', 'Aa31LG4G1620' => 'aar', 'Aa31LG4G1670' => 'aar', 'Aa31LG4G3510' => 'aar', 'Aa31LG7G880' => 'aar', 'Aa31LG7G900' => 'aar', 'Aa31LG7G940' => 'aar', 'Aa31LG8G7450' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2220' => 'aag', 'Actinidia10698' => 'ach', 'Actinidia18875' => 'ach', 'Actinidia35307' => 'ach', 'Actinidia35415' => 'ach', 'Ah.01g013060' => 'amhyb', 'Ah.02g117130' => 'amhyb', 'Ah.04g165140' => 'amhyb', 'Ah.06g183200' => 'amhyb', 'Ah.12g056360' => 'amhyb', 'AL1G28490' => 'aly', 'AL1G28510' => 'aly', 'AL2G32990' => 'aly', 'AL2G39970' => 'aly', 'AL2G40020' => 'aly', 'AL3G34560' => 'aly', 'Aqoxy1G03828' => 'aox', 'Aqoxy2G04018' => 'aox', 'Aqoxy3G04190' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03NSXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.09Z0E1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0N8L69' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.263Z8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2NDG71' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HU3V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AN02JT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXLP46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DYE5XP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0CBZR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GK8DAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.INL5UD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J5J7JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0R7J8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP4XCV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7DDLS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1ILT0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P3VU3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R83HA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RFB5QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1ZYBW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3VW13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ87UR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZGM5A8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH2YPS' => 'arhy', 'AT1G16370' => 'ath', 'AT1G16390' => 'ath', 'AT1G73220' => 'ath', 'AT1G79360' => 'ath', 'AT1G79410' => 'ath', 'AT3G20660' => 'ath', 'ATR0618G308' => 'atr', 'ATR0763G003' => 'atr', 'ATR0763G067' => 'atr', 'ATR0763G086' => 'atr', 'ATR0804G086' => 'atr', 'ATR1000G002' => 'atr', 'Atru.chr1.48' => 'acertr', 'Atru.chr1.49' => 'acertr', 'Atru.chr1.51' => 'acertr', 'Atru.chr1.52' => 'acertr', 'Atru.chr12.654' => 'acertr', 'Atru.chr12.658' => 'acertr', 'Atru.chr12.680' => 'acertr', 'Atru.chr12.685' => 'acertr', 'Atru.chr12.699' => 'acertr', 'Atru.chr12.700' => 'acertr', 'Atru.chr2.2452' => 'acertr', 'Atru.chr2.2453' => 'acertr', 'Atru.chr9.265' => 'acertr', 'AUR62007462' => 'cqu', 'AUR62014971' => 'cqu', 'AUR62015184' => 'cqu', 'AUR62015195' => 'cqu', 'AUR62017654' => 'cqu', 'AUR62017657' => 'cqu', 'AUR62019711' => 'cqu', 'AUR62022787' => 'cqu', 'AUR62029265' => 'cqu', 'AUR62029266' => 'cqu', 'AUR62034194' => 'cqu', 'AUR62037981' => 'cqu', 'AUR62039921' => 'cqu', 'AUR62044731' => 'cqu', 'BcaB02g06614' => 'bca', 'BcaB02g06617' => 'bca', 'BcaB02g06618' => 'bca', 'BcaB02g07213' => 'bca', 'BcaB02g08678' => 'bca', 'BcaB02g09466' => 'bca', 'BcaB03g13040' => 'bca', 'BcaB03g15034' => 'bca', 'BcaB05g24198' => 'bca', 'BcaB05g25194' => 'bca', 'BcaB05g25197' => 'bca', 'BcaB06g26133' => 'bca', 'BcaC03g14766' => 'bca', 'BcaC03g15886' => 'bca', 'BcaC03g15890' => 'bca', 'BcaC05g25577' => 'bca', 'BcaC05g25578' => 'bca', 'BcaC05g25579' => 'bca', 'BcaC05g28295' => 'bca', 'BcaC08g45359' => 'bca', 'BcaC08g46739' => 'bca', 'BcaC08g46740' => 'bca', 'BcaC08g47496' => 'bca', 'BcaC08g47500' => 'bca', 'BcaC08g47501' => 'bca', 'BcaC08g47502' => 'bca', 'BolC2t08348H' => 'bol', 'BolC2t09135H' => 'bol', 'BolC2t09136H' => 'bol', 'BolC2t09654H' => 'bol', 'BolC2t09657H' => 'bol', 'BolC5t30177H' => 'bol', 'BolC5t30178H' => 'bol', 'BolC5t30180H' => 'bol', 'BolC5t33079H' => 'bol', 'BolC6t38152H' => 'bol', 'BolC6t39775H' => 'bol', 'BolC6t40343H' => 'bol', 'BolC6t40347H' => 'bol', 'BolC6t40348H' => 'bol', 'BolC8t49372H' => 'bol', 'BraA02t06432Z' => 'bra', 'BraA02t06902Z' => 'bra', 'BraA02t06905Z' => 'bra', 'BraA02t07280Z' => 'bra', 'BraA02t07282Z' => 'bra', 'BraA05t21695Z' => 'bra', 'BraA06t24395Z' => 'bra', 'BraA06t24396Z' => 'bra', 'BraA06t24397Z' => 'bra', 'BraA07t30360Z' => 'bra', 'BraA07t31466Z' => 'bra', 'BraA07t31953Z' => 'bra', 'BraA07t31957Z' => 'bra', 'BraA07t31958Z' => 'bra', 'BraA08t35058Z' => 'bra', 'C02p22120' => 'bna', 'C02p30830' => 'bna', 'C02p30850' => 'bna', 'C02p36560' => 'bna', 'C02p36600' => 'bna', 'C05p14520' => 'bna', 'C05p14530' => 'bna', 'C05p14540' => 'bna', 'C05p14550' => 'bna', 'C05p14560' => 'bna', 'C05p14570' => 'bna', 'C05p14580' => 'bna', 'C05p14590' => 'bna', 'C05p43580' => 'bna', 'C06p29910' => 'bna', 'C06p47360' => 'bna', 'C06p53250' => 'bna', 'C06p53290' => 'bna', 'C06p53300' => 'bna', 'C08p17470' => 'bna', 'CAN.G1310.10' => 'can', 'CAN.G1313.6' => 'can', 'CAN.G162.136' => 'can', 'CAN.G162.137' => 'can', 'CAN.G162.138' => 'can', 'CAN.G294.12' => 'can', 'CAN.G774.43' => 'can', 'CANSAT11G0476' => 'cansat', 'CANSAT56G3009' => 'cansat', 'CANSAT56G3266' => 'cansat', 'CARHR016850' => 'chi', 'CARHR016860' => 'chi', 'CARHR066230' => 'chi', 'CARHR073020' => 'chi', 'CARHR073070' => 'chi', 'CARHR096470' => 'chi', 'Carub.0001s1611' => 'cru', 'Carub.0001s1613' => 'cru', 'Carub.0002s2002' => 'cru', 'Carub.0002s2622' => 'cru', 'Carub.0002s2627' => 'cru', 'Carub.0003s2064' => 'cru', 'Ca_01780_v3' => 'car', 'Ca_01781_v3' => 'car', 'Ca_01782_v3' => 'car', 'Ca_01783_v3' => 'car', 'Ca_18837_v3' => 'car', 'Ca_29682_v3' => 'car', 'Ca_30096_v3' => 'car', 'Ca_30766_v3' => 'car', 'CBR_g20123' => 'cbr', 'CBR_g3059' => 'cbr', 'CBR_g36861' => 'cbr', 'CBR_g3842' => 'cbr', 'Cc04_g08760' => 'ccan', 'Cc05_g13050' => 'ccan', 'Cc08_g05460' => 'ccan', 'CDE01G0439' => 'cde', 'CDE05G1178' => 'cde', 'CDE12G0381' => 'cde', 'Cfa008047' => 'cfa', 'Cfa019765' => 'cfa', 'Ciclev10004786m.g' => 'ccl', 'Ciclev10006697m.g' => 'ccl', 'Ciclev10007977m.g' => 'ccl', 'Ciclev10019486m.g' => 'ccl', 'CiPaw.11G180700' => 'cil', 'CiPaw.15G113200' => 'cil', 'CiPaw.16G079500' => 'cil', 'CiPaw.16G079600' => 'cil', 'CiPaw.16G079700' => 'cil', 'CiPaw.16G079900' => 'cil', 'ClCG05G014930' => 'cla', 'ClCG10G006180' => 'cla', 'ClCG10G006190' => 'cla', 'COL.COLO4_09541' => 'col', 'COL.COLO4_24459' => 'col', 'COL.COLO4_24984' => 'col', 'Cpa.g.sc111.35' => 'cpa', 'Cpa.g.sc80.119' => 'cpa', 'Cpa.g.sc80.120' => 'cpa', 'Cre02.g100850' => 'cre', 'Cre06.g285300' => 'cre', 'Cre09.g387060' => 'cre', 'CsaV3_3G005710' => 'csa', 'CsaV3_3G022700' => 'csa', 'CsaV3_3G022710' => 'csa', 'CSS0001674' => 'camsi', 'CSS0006227' => 'camsi', 'CSS0015337' => 'camsi', 'CSS0035604' => 'camsi', 'CSS0037376' => 'camsi', 'CSS0040937' => 'camsi', 'DCAR_009662' => 'dca', 'DCAR_009663' => 'dca', 'DCAR_014741' => 'dca', 'DCAR_022513' => 'dca', 'DCAR_027169' => 'dca', 'Dinv03957' => 'din', 'Dinv42458' => 'din', 'Duzib213G0068' => 'dzi', 'Duzib213G0165' => 'dzi', 'Duzib213G0406' => 'dzi', 'Duzib268G0685' => 'dzi', 'ECA236G0906' => 'eca', 'ECA236G4908' => 'eca', 'ECA240G4758' => 'eca', 'EL10Ac4g08002' => 'bvu', 'EL10Ac4g08469' => 'bvu', 'EL10Ac5g12996' => 'bvu', 'EL10Ac9g22907' => 'bvu', 'EL10Ac9g22908' => 'bvu', 'EL10Ac9g22909' => 'bvu', 'EL10Ac9g22910' => 'bvu', 'EL10Ac9g22911' => 'bvu', 'EL10Ac9g22912' => 'bvu', 'EL10Ac9g22913' => 'bvu', 'EL10Ac9g22914' => 'bvu', 'Eucgr.B00845' => 'egr', 'Eucgr.B00846' => 'egr', 'Eucgr.F00783' => 'egr', 'Eucgr.F00829' => 'egr', 'Eucgr.F01005' => 'egr', 'Eucgr.F01008' => 'egr', 'Eucgr.F01018' => 'egr', 'Eucgr.F04367' => 'egr', 'Eucgr.F04368' => 'egr', 'Eucgr.I00079' => 'egr', 'Eucgr.K02307' => 'egr', 'Eucgr.L03178' => 'egr', 'FAN02G4158' => 'fan', 'FAN05G2495' => 'fan', 'FAN09G1383' => 'fan', 'FAN11G2355' => 'fan', 'FAN11G4010' => 'fan', 'FAN14G0047' => 'fan', 'FAN16G0305' => 'fan', 'FAN21G2673' => 'fan', 'FAN25G2500' => 'fan', 'FvH4_3g14010' => 'fve', 'FvH4_3g14030' => 'fve', 'FvH4_6g28280' => 'fve', 'Glyma.02G149300' => 'gma', 'Glyma.04G171800' => 'gma', 'Glyma.06G192100' => 'gma', 'Glyma.06G263400' => 'gma', 'Glyma.09G001700' => 'gma', 'Glyma.09G166400' => 'gma', 'Glyma.12G139000' => 'gma', 'Glyma.12G216300' => 'gma', 'Glyma.12G216400' => 'gma', 'Glyma.13G284900' => 'gma', 'Glyma.16G216500' => 'gma', 'Gohir.A01G072400' => 'ghi', 'Gohir.A12G271500' => 'ghi', 'Gohir.A12G271600' => 'ghi', 'Gohir.A13G126300' => 'ghi', 'Gohir.A13G142500' => 'ghi', 'Gohir.D01G059200' => 'ghi', 'Gohir.D12G272200' => 'ghi', 'Gohir.D12G272250' => 'ghi', 'Gohir.D12G272300' => 'ghi', 'Gohir.D13G130000' => 'ghi', 'Gohir.D13G147200' => 'ghi', 'Gorai.002G080200' => 'gra', 'Gorai.008G292600' => 'gra', 'Gorai.008G292700' => 'gra', 'Gorai.008G292800' => 'gra', 'Gorai.013G146100' => 'gra', 'Gorai.013G165000' => 'gra', 'GSVIVG01012912001' => 'vvi', 'GSVIVG01014555001' => 'vvi', 'GSVIVG01036714001' => 'vvi', 'HanXRQChr11g0332741' => 'han', 'HanXRQChr11g0332751' => 'han', 'HanXRQChr13g0407571' => 'han', 'Haze_02552' => 'cav', 'Haze_09577' => 'cav', 'Haze_13041' => 'cav', 'Haze_18502' => 'cav', 'Haze_18506' => 'cav', 'Haze_18507' => 'cav', 'Hma1.2p1_0905F.1_g235340' => 'hma', 'Hma1.2p1_1054F.1_g252600' => 'hma', 'Hma1.2p1_1404F.1_g281350' => 'hma', 'HPP92_004143' => 'vpl', 'HPP92_004144' => 'vpl', 'HPP92_012433' => 'vpl', 'HPP92_012434' => 'vpl', 'HPP92_016322' => 'vpl', 'HPP92_016544' => 'vpl', 'HPP92_016545' => 'vpl', 'HPP92_017543' => 'vpl', 'HPP92_017569' => 'vpl', 'Lalb_Chr01g0006231' => 'lal', 'Lalb_Chr01g0007241' => 'lal', 'Lalb_Chr22g0357211' => 'lal', 'Lalb_Chr22g0357221' => 'lal', 'Lalb_Chr22g0357231' => 'lal', 'Lalb_Chr22g0357251' => 'lal', 'Lalb_Chr22g0357301' => 'lal', 'Lj1A861T65' => 'lonja', 'Lj1C861T16' => 'lonja', 'Lj1C861T17' => 'lonja', 'Lj2g0001093' => 'lja', 'Lj3g0001894' => 'lja', 'Lj3g0002205' => 'lja', 'Lj3g0012294' => 'lja', 'Lj3g0018221' => 'lja', 'Lj3g0023789' => 'lja', 'Lj4g0025798' => 'lja', 'Lj5C166T7' => 'lonja', 'Lj9C349T13' => 'lonja', 'Lj9C349T8' => 'lonja', 'Lj9P665T18' => 'lonja', 'Lj9P668T25' => 'lonja', 'Lsat_1_v5_gn_7_107700' => 'lsa', 'Lsat_1_v5_gn_7_107740' => 'lsa', 'Lsat_1_v5_gn_9_94921' => 'lsa', 'Manes.03G120832' => 'mes', 'Manes.10G078400' => 'mes', 'Manes.15G079000' => 'mes', 'Manes.16G046838' => 'mes', 'Mapoly0079s0017' => 'mpo', 'Mapoly0081s0019' => 'mpo', 'MBI02_g26226_MAGBIO' => 'mbi', 'MBI03_g24039_MAGBIO' => 'mbi', 'MBI03_g44020_MAGBIO' => 'mbi', 'MBI18_g19686_MAGBIO' => 'mbi', 'MBI18_g27536_MAGBIO' => 'mbi', 'MBI18_g27543_MAGBIO' => 'mbi', 'MBI18_g30532_MAGBIO' => 'mbi', 'MBI18_g33400_MAGBIO' => 'mbi', 'MBI18_g41881_MAGBIO' => 'mbi', 'MBI18_g41882_MAGBIO' => 'mbi', 'MCO14G329' => 'mco', 'MD03G1215000' => 'mdo', 'MD05G1238600' => 'mdo', 'MD05G1238900' => 'mdo', 'MD10G1217000' => 'mdo', 'MD11G1229700' => 'mdo', 'Medtr2g081930' => 'mtr', 'Medtr2g081950' => 'mtr', 'Medtr2g081960' => 'mtr', 'Medtr4g030040' => 'mtr', 'Medtr4g030210' => 'mtr', 'Medtr4g081480' => 'mtr', 'Medtr4g081490' => 'mtr', 'Medtr4g120720' => 'mtr', 'Medtr5g080050' => 'mtr', 'Medtr5g082760' => 'mtr', 'Medtr8g039070' => 'mtr', 'Medtr8g039190' => 'mtr', 'Medtr8g447340' => 'mtr', 'MELO3C018145.2' => 'cme', 'MELO3C018146.2' => 'cme', 'MELO3C031857.2' => 'cme', 'Migut.E00653' => 'egut', 'Migut.E00654' => 'egut', 'Migut.H01654' => 'egut', 'Migut.M01500' => 'egut', 'Migut.M01826' => 'egut', 'Migut.O00252' => 'egut', 'MSTRG.11551' => 'ama', 'Nitab4.5_0000161g0020' => 'nta', 'Nitab4.5_0000161g0060' => 'nta', 'Nitab4.5_0000161g0070' => 'nta', 'Nitab4.5_0000161g0100' => 'nta', 'Nitab4.5_0000161g0110' => 'nta', 'Nitab4.5_0000161g0120' => 'nta', 'Nitab4.5_0000161g0180' => 'nta', 'Nitab4.5_0000309g0130' => 'nta', 'Nitab4.5_0000309g0140' => 'nta', 'Nitab4.5_0000351g0290' => 'nta', 'Nitab4.5_0000552g0070' => 'nta', 'Nitab4.5_0001615g0210' => 'nta', 'Nitab4.5_0001615g0220' => 'nta', 'Nitab4.5_0001615g0230' => 'nta', 'Nitab4.5_0002761g0010' => 'nta', 'Nitab4.5_0002761g0020' => 'nta', 'Nitab4.5_0002781g0090' => 'nta', 'Nitab4.5_0003620g0020' => 'nta', 'Nitab4.5_0004200g0050' => 'nta', 'Nitab4.5_0004200g0130' => 'nta', 'Nitab4.5_0004585g0020' => 'nta', 'Nitab4.5_0004585g0030' => 'nta', 'Nitab4.5_0004585g0040' => 'nta', 'Nitab4.5_0004585g0080' => 'nta', 'Nitab4.5_0005228g0010' => 'nta', 'Nitab4.5_0006607g0030' => 'nta', 'Nitab4.5_0006630g0060' => 'nta', 'Nitab4.5_0007578g0010' => 'nta', 'Nitab4.5_0008355g0010' => 'nta', 'Nitab4.5_0010968g0060' => 'nta', 'Nitab4.5_0012729g0010' => 'nta', 'Nitab4.5_0013184g0020' => 'nta', 'Nitab4.5_0024628g0010' => 'nta', 'Nitab4.5_0025374g0010' => 'nta', 'Nn1g02967' => 'nnu', 'Nn1g06925' => 'nnu', 'Nn2g11250' => 'nnu', 'Nn4g24824' => 'nnu', 'Nn5g30175' => 'nnu', 'Nn6g31878' => 'nnu', 'Nn6g31879' => 'nnu', 'Nn7g38382' => 'nnu', 'Oeu019742.1' => 'oeu', 'Oeu019745.1' => 'oeu', 'Oeu019748.1' => 'oeu', 'Oeu023546.1' => 'oeu', 'Oeu029452.1' => 'oeu', 'Oeu053389.1' => 'oeu', 'Oeu060526.1' => 'oeu', 'Os04g0631100' => 'osa', 'Os07g0561800' => 'osa', 'Os07g0562400' => 'osa', 'Peaxi162Scf00000g00814' => 'pax', 'Peaxi162Scf00006g00191' => 'pax', 'Peaxi162Scf00119g00917' => 'pax', 'Peaxi162Scf00286g00441' => 'pax', 'Peaxi162Scf00423g00074' => 'pax', 'Peaxi162Scf00451g00332' => 'pax', 'Peaxi162Scf01365g00033' => 'pax', 'Peaxi162Scf01366g00022' => 'pax', 'Peaxi162Scf01366g00023' => 'pax', 'PGR044G0683' => 'pgr', 'PGR044G1739' => 'pgr', 'PGR083G0738' => 'pgr', 'PGR083G1004' => 'pgr', 'PGR083G2303' => 'pgr', 'PGSC0003DMG400009659' => 'stu', 'PGSC0003DMG400010562' => 'stu', 'PGSC0003DMG400010563' => 'stu', 'PGSC0003DMG400015764' => 'stu', 'PGSC0003DMG400015765' => 'stu', 'PGSC0003DMG400019233' => 'stu', 'PGSC0003DMG400019268' => 'stu', 'PGSC0003DMG400019269' => 'stu', 'PGSC0003DMG400036598' => 'stu', 'PGSC0003DMG400037206' => 'stu', 'Phvul.004G142000' => 'pvu', 'Phvul.005G089600' => 'pvu', 'Phvul.009G189000' => 'pvu', 'Phvul.011G145400' => 'pvu', 'Phvul.011G215500' => 'pvu', 'Phvul.011G215600' => 'pvu', 'Potri.010G174300' => 'ptr', 'Potri.010G174400' => 'ptr', 'Potri.011G130533' => 'ptr', 'Potri.012G037400' => 'ptr', 'Potri.015G029400' => 'ptr', 'Potri.016G039000' => 'ptr', 'Pp3c18_9100' => 'ppa', 'Pp3c21_18700' => 'ppa', 'PRCOL_00003271' => 'pco', 'PRCOL_00004555' => 'pco', 'Prupe.4G127100' => 'ppe', 'Prupe.4G127200' => 'ppe', 'Prupe.4G127300' => 'ppe', 'Prupe.4G127400' => 'ppe', 'Prupe.4G127600' => 'ppe', 'Prupe.4G127800' => 'ppe', 'Prupe.4G197800' => 'ppe', 'Psat4g145960' => 'psa', 'Psat4g170600' => 'psa', 'Psat5g248720' => 'psa', 'Psat5g249000' => 'psa', 'Psat5g249120' => 'psa', 'Psat5g249160' => 'psa', 'Psat6g050680' => 'psa', 'Psat6g050800' => 'psa', 'Psat7g160200' => 'psa', 'Psat7g227560' => 'psa', 'PSO170G6772' => 'pso', 'PSO210G0291' => 'pso', 'PSO210G2324' => 'pso', 'PSO210G4733' => 'pso', 'PSO339G2562' => 'pso', 'PSO384G1344' => 'pso', 'PSO832G1601' => 'pso', 'QL04p094076' => 'qlo', 'QL04p094100' => 'qlo', 'QL04p094121' => 'qlo', 'QL04p094135' => 'qlo', 'QL04p094176' => 'qlo', 'QL04p094291' => 'qlo', 'QL04p094311' => 'qlo', 'QL04p094316' => 'qlo', 'QL04p094361' => 'qlo', 'QL04p094432' => 'qlo', 'QL04p094449' => 'qlo', 'QL04p094504' => 'qlo', 'QL04p094514' => 'qlo', 'QL08p014425' => 'qlo', 'QL09p028443' => 'qlo', 'QL09p028448' => 'qlo', 'QL09p028467' => 'qlo', 'RcHm_v2.0_Chr2g0132341' => 'rch', 'RcHm_v2.0_Chr5g0023241' => 'rch', 'RcHm_v2.0_Chr5g0023261' => 'rch', 'RcHm_v2.0_Chr5g0023291' => 'rch', 'RcHm_v2.0_Chr5g0023301' => 'rch', 'RcHm_v2.0_Chr5g0023311' => 'rch', 'RcHm_v2.0_Chr5g0023351' => 'rch', 'Rhsim01G0077200' => 'rsi', 'Rhsim01G0077300' => 'rsi', 'RhsimUnG0254400' => 'rsi', 'Sabra10G0134300' => 'sbr', 'Sabra11G0117800' => 'sbr', 'Sabra12G0025900' => 'sbr', 'Sabra15G0024400' => 'sbr', 'Sabra15G0024500' => 'sbr', 'Sabra15G0024600' => 'sbr', 'SalBow5G5338' => 'sbo', 'SalBow8G2429' => 'sbo', 'SalBow8G3713' => 'sbo', 'Sc03g0009360' => 'sci', 'Sc03g0009370' => 'sci', 'Sc03g0009380' => 'sci', 'Sc03g0009450' => 'sci', 'Sc06g0003010' => 'sci', 'Sc22g0002090' => 'sci', 'Sed0004837' => 'sed', 'Sed0027275' => 'sed', 'SEGI_00438' => 'sgi', 'SEGI_05962' => 'sgi', 'SEGI_08061' => 'sgi', 'SEGI_18431' => 'sgi', 'SEGI_19470' => 'sgi', 'SEGI_23139' => 'sgi', 'SEGI_26168' => 'sgi', 'SEGI_27049' => 'sgi', 'SEGI_27456' => 'sgi', 'SEGI_28861' => 'sgi', 'SEGI_32201' => 'sgi', 'SEGI_40521' => 'sgi', 'SGA_v2.0_scaffold161G37866' => 'sas', 'SGA_v2.0_scaffold17G08140' => 'sas', 'SGA_v2.0_scaffold17G08144' => 'sas', 'SGA_v2.0_scaffold239G44000' => 'sas', 'SGA_v2.0_scaffold239G44005' => 'sas', 'SGA_v2.0_scaffold239G44008' => 'sas', 'SGA_v2.0_scaffold25G10755' => 'sas', 'SGA_v2.0_scaffold363G49938' => 'sas', 'SGA_v2.0_scaffold45G17154' => 'sas', 'SGA_v2.0_scaffold45G17155' => 'sas', 'SGA_v2.0_scaffold472G52095' => 'sas', 'SGA_v2.0_scaffold495G52453' => 'sas', 'SGA_v2.0_scaffold49G18179' => 'sas', 'SHI24560' => 'shi', 'SHI24561' => 'shi', 'Solyc05g053860.4' => 'sly', 'Solyc07g063920.3' => 'sly', 'Solyc07g063930.4' => 'sly', 'Solyc08g081090.1' => 'sly', 'Solyc10g074850.3' => 'sly', 'Solyc12g017380.3' => 'sly', 'Sopen05g032330' => 'spe', 'Sopen07g032050' => 'spe', 'Sopen07g032060' => 'spe', 'Sopen07g032070' => 'spe', 'Sopen08g029410' => 'spe', 'Sopen12g008160' => 'spe', 'Sp1g14540' => 'spa', 'Sp3g18700' => 'spa', 'Sp5g21820' => 'spa', 'Sp5g21830' => 'spa', 'Sp5g28190' => 'spa', 'Sp5g34420' => 'spa', 'Sp5g34460' => 'spa', 'TAR371G1201' => 'tar', 'TAR627G0676' => 'tar', 'TAR627G0884' => 'tar', 'TAR627G0974' => 'tar', 'TAR629G0926' => 'tar', 'TAR629G0964' => 'tar', 'TAR629G2630' => 'tar', 'TAR629G2648' => 'tar', 'THA.LOC104798782' => 'tha', 'THA.LOC104808142' => 'tha', 'THA.LOC104808144' => 'tha', 'THA.LOC104810633' => 'tha', 'THA.LOC104811300' => 'tha', 'THA.LOC104812388' => 'tha', 'THA.LOC104813602' => 'tha', 'Thecc.03G065600' => 'tca', 'Thecc.03G065700' => 'tca', 'Thecc.07G059800' => 'tca', 'Thecc.07G060600' => 'tca', 'Thecc.07G118500' => 'tca', 'Thecc.07G191500' => 'tca', 'Thecc.07G192300' => 'tca', 'Thhalv10003188m.g' => 'esa', 'Thhalv10007377m.g' => 'esa', 'Thhalv10007384m.g' => 'esa', 'Thhalv10018374m.g' => 'esa', 'Thhalv10018401m.g' => 'esa', 'Thhalv10018417m.g' => 'esa', 'Thhalv10022015m.g' => 'esa', 'TPR.G22755' => 'tpr', 'TPR.G23971' => 'tpr', 'TPR.G27208' => 'tpr', 'TPR.G28608' => 'tpr', 'TPR.G30441' => 'tpr', 'TPR.G33141' => 'tpr', 'TPR.G34111' => 'tpr', 'TPR.G34174' => 'tpr', 'TPR.G35370' => 'tpr', 'TPR.G35597' => 'tpr', 'TPR.G36448' => 'tpr', 'TPR.G36803' => 'tpr', 'TPR.G40680' => 'tpr', 'TPR.G6305' => 'tpr', 'TPR.G7430' => 'tpr', 'TPR.G9401' => 'tpr', 'TWI39G0042' => 'twi', 'TWI39G0454' => 'twi', 'TWI53G1237' => 'twi', 'TWI59G0373' => 'twi', 'TWI60G1128' => 'twi', 'TWI73G1069' => 'twi', 'unitig_578.g16336' => 'ugi', 'unitig_578.g16337' => 'ugi', 'unitig_747.g21561' => 'ugi', 'unitig_8.g3868' => 'ugi', 'unitig_8.g3869' => 'ugi', 'unitig_8.g4747' => 'ugi', 'vmacro09599' => 'vma', 'vmacro20592' => 'vma', 'vmacro20593' => 'vma', 'vmacro20657' => 'vma', 'vmacro20658' => 'vma', 'vmacro20659' => 'vma', 'vmacro22730' => 'vma', 'vmacro22762' => 'vma', 'vmacro23138' => 'vma', 'vmacro23139' => 'vma', 'VMungo0464G0935' => 'vmu', 'VMungo1080G0518' => 'vmu', 'VMungo1127G0107' => 'vmu', 'VMungo1127G0430' => 'vmu', 'VMungo1127G1110' => 'vmu', 'VMungo1127G1344' => 'vmu', 'VMungo1127G1871' => 'vmu', 'VMungo1127G2151' => 'vmu', 'VMungo1127G2189' => 'vmu', 'VMungo1309G2712' => 'vmu', 'Zm00001eb069630' => 'zma', 'Zm00001eb324230' => 'zma', 'Zm00001eb392600' => 'zma', 'Zm00001eb431560' => 'zma' ) $gf_id = 'HOM05D000839' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000839' ) $data_identifier = 'HOM05D000839' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 25, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 13, 'cqu' => (int) 14, 'bca' => (int) 26, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 4, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 2, 'dzi' => (int) 4, 'eca' => (int) 3, 'bvu' => (int) 11, 'egr' => (int) 12, 'fan' => (int) 9, 'fve' => (int) 3, 'gma' => (int) 11, 'ghi' => (int) 11, 'gra' => (int) 6, 'vvi' => (int) 3, 'han' => (int) 3, 'cav' => (int) 6, 'hma' => (int) 3, 'vpl' => (int) 9, 'lal' => (int) 7, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 3, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 13, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 1, 'nta' => (int) 34, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 3, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 6, 'ppa' => (int) 2, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 7, 'qlo' => (int) 17, 'rch' => (int) 7, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 2, 'sgi' => (int) 12, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 16, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 10, 'vmu' => (int) 10, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1